Publications

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Journal Articles

Bardhan, K. & Sarkar, C. (2025). DGEAR: A web-based application for differential gene expression analysis and downstream functional insights. Functional & Integrative Genomics, 25, 264.
Sarkar, D. & Sarkar, C. (2025). AttnSeq-PPI: Enhancing protein-protein interaction network prediction using transfer learning-driven hybrid attention. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 1874(1), 141102.
Sarkar, C., Parsad, R., Mishra, D.C., and Rai, A. (2021). A Web Tool for Consensus Gene Regulatory Network Construction. Frontiers in Genetics, 12, 745827.
Sarkar, C., Parsad, R., Mishra, D.C. and Rai, A. (2020). An ensemble approach for gene regulatory network study in rice blast. Journal of Crop and Weed, 16, 1–8.
Sarkar, C., Saklani, B.K., Singh, P.K., Asthana, R.K. and Sharma, T.R. (2019). Variation in the LRR region of Pi54 protein alters its interaction with the AvrPi54 protein revealed in silico analysis. PloS ONE, 14(11), e0224088.
Ray, S., Singh, P.K., Gupta D.K., Mahato, A.K., Sarkar, C., et al. (2016). Analysis of Magnaporthe oryzae genome reveals a fungal effector, which is able to induce resistance response in transgenic rice line containing resistance gene, Pi54. Frontiers in Plant Science, 7, 1140.

Book Chapters

Iquebal, M.A., Jaiswal, S., Mukhopadhyay, C.S., Sarkar, C., Rai, A. and Kumar, D. (2015). Applications of bioinformatics in plant and agriculture. In PlantOmics: The Omics of Plant Science, Springer India, pp. 756–789.

Conference Proceedings

Sarkar, C., Parsad, R. and Misra, D.C. (2018). An Ensemble Approach for Gene Regulatory Network Construction. In e-Proceedings Research Frontiers in Precision Agriculture, pp. 243–245. ISBN: 978-93-88237-13-0.

CRAN R Packages

Bardhan K, Sarkar C (2024). DGEAR: Differential Gene Expression Analysis with R. R package version 0.1.4.
Sarkar C, Sarkar D, Parsad R, Mishra D (2022). EGRNi: Ensemble Gene Regulatory Network Inference. R package version 0.1.6.

Preprints

Bardhan, K., & Sarkar, C. (2024). DGEAR: An Ensemble Based Majority Voting Algorithm for Differential Gene Expression Analysis. SSRN.
Sarkar, D., & Sarkar, C. (2024). AttnSeq-PPI: Self and Cross Attention-Driven Prediction of sequence-based Protein-Protein Interactions. Authorea.