Web Tools
Deep-Interact Studio — Interactive Deep Learning Model Building Platform for Biomolecular Interaction Prediction
Interactive web platform for building, training, and comparing custom deep learning models for protein-protein, drug-target, RNA-protein, and protein-DNA interaction prediction, with integrated interpretability.
CABIgoWEB — Deep Learning Framework for Biomarker Prediction
A deep learning framework to predict biomarkers based on attention and knowledge graph embeddings.
ARACoFusion-PPI — Arabidopsis Protein-Protein Interaction
Deep learning powered tool for Arabidopsis protein-protein interaction prediction and network analysis.
AttnSeq-PPI — Deep Learning Powered Protein-Protein Interaction
A deep learning framework for predicting protein-protein interactions using attention mechanisms.
DGEAR — Differential Gene Expression Analysis with R
A comprehensive web application for differential gene expression analysis with downstream functional insights.
CABIgoWEB — Deep Learning Framework for Biomarker Prediction
A deep learning framework to predict biomarkers based on attention and knowledge graph embeddings.
R Packages (CRAN)
EGRNi: Ensemble Gene Regulatory Network Inference
Sarkar, C., Sarkar, D., Parsad, R., and Mishra, D. (2022)
DGEAR: Differential Gene Expression Analysis with R
Bardhan, K. and Sarkar, C. (2024)