Web Tools
EGRNi — Consensus Gene Regulatory Network Construction
A web tool for constructing consensus gene regulatory networks using ensemble methods.
DGEAR — Differential Gene Expression Analysis with R
A comprehensive web application for differential gene expression analysis with downstream functional insights.
AttnSeq-PPI — Deep Learning Powered Protein-Protein Interaction
A deep learning framework for predicting protein-protein interactions using attention mechanisms.
ARACoFusion-PPI — Arabidopsis Protein-Protein Interaction
Deep learning powered tool for Arabidopsis protein-protein interaction prediction and network analysis.
GO-DMBC — Deep Learning Framework for Biomarker Prediction
A deep learning framework to predict biomarkers based on attention and knowledge graph embeddings.
R Packages (CRAN)
EGRNi: Ensemble Gene Regulatory Network Inference
Sarkar, C., Sarkar, D., Parsad, R., and Mishra, D. (2022)
DGEAR: Differential Gene Expression Analysis with R
Bardhan, K. and Sarkar, C. (2024)